1. D. Ben-Amotz and I. Y. Chan, "Second singlet excited state of biacetyl," J. Phys. Chem., 86, 2428
(1982).
2. D. Ben-Amotz, S. M. George and C. B. Harris, "Transient stimulated Raman scattering in high laser
depletion and its effects on vibrational dephasing experiments," Chem. Phys. Lett. 97, 533 (1983).
3. D. Ben-Amotz, M. Berg, S. M. George, A. L. Harris and C. B. Harris,"Picosecond vibrational dephasing
experiments in liquids under high laser depletion conditions," in: Applications of Picosecond Spectroscopy
to Chemistry, ed. K. B. Eisenthal, (Reidel, Dordrecht, 1984), p. 165
4. D. Ben-Amotz and C. B. Harris, "Ground and excited state torsional dynamics of a triphenyl-methane
dye in low viscosity solvents," Chem. Phys. Lett., 119, 305 (1985).
5. D. Ben-Amotz and C. B. Harris, "Picosecond studies of barrierless isomerization in liquids,"
J. Am. Opt. Soc. B, 3, 12 (1986).
6. D. Ben-Amotz and C. B. Harris, "Picosecond studies of barrierless torsional diffusion." in:
Ultrafast Phenomena V, ed. G. R. Fleming and A. E. Seigman, (Springer, Berlin, 1986) p. 350.
7. D. Ben-Amotz, R. Jeanloz and C. B. Harris, "Picosecond studies of the non-radiative decay dynamics of
triphenyl methane dyes in a diamond anvil pressure cell." in: XV International Quantum Electronics Conference,
Technical Digest Series Volume 21 (Optical Society of America, Washington DC, 1987) p.106-107.
8. D. Ben-Amotz and C. B. Harris, "Torsional dynamics of molecules on barrierless potentials in liquids. I.
Temperature and wavelength dependent studies of triphenyl methane dyes," J. Chem. Phys., 86, 4856
(1987).
9. D. Ben-Amotz and C. B. Harris, "Torsional dynamics of molecules on barrierless potentials in liquids. II.
Test of theoretical models," J. Chem. Phys., 86, 5433 (1987).
10. D. Ben-Amotz, R. Jeanloz and C. B. Harris, "Torsional Dynamics of molecules on barrierless potentials in
liquids. III. Pressure dependent studies of triphenyl methane dyes solutions in a diamond anvil cell," J.
Chem. Phys. 86, 6119 (1987).
11. D. Ben-Amotz and T. W. Scott, "Microscopic frictional forces on molecular motion in liquids. Picosecond
rotational diffusion in alkanes and alcohols," J. Chem. Phys., 87, 3739 (1987).
12. D. Ben-Amotz, M. R. Zakin, H. E. King Jr. and D. R. Herschbach, "Pressure induced vibrational fundamental
and overtone frequency shifts of iodine molecules in solution," J. Phys. Chem. 92, 1392 (1988).
13. D. Ben-Amotz and J. M. Drake, "The solute size effect in rotational diffusion experiments. A test of
microscopic friction theories," J. Chem. Phys., 89, 1019 (1988).
14. D. Ben-Amotz, T. W. Scott and J. M. Drake, "Hydrodynamic and molecular contributions to rotational
diffusion in liquids," in: Ultrafast Phenomena VI, ed. T. Yajima, K. Yoshihara, C. B. Harris and S.
Shionoya (Springer, Berlin 1988) p. 548-550.
15. D. Ben-Amotz and D. R. Herschbach, "Estimation of effective diameters for molecular fluids," J. Phys.
Chem., 94, 1038-1047 (1990).
16. D. Ben-Amotz and D. R. Herschbach, "Correlation of the Zeno (Z=1) line for supercritical fluids with
vapor-liquid rectilinear diameters," Israel Journal of Chemistry, 30, 59-68 (1990).
17. D. Ben-Amotz, R. G. Cooks, L. Dejarme, J. C. Gunderson, S. H. Hoke, B. Kahr, G. L. Payne and J. M.
Wood, "Occurrence and Fragmentation of High-Mass Fullerenes," Chem. Phys. Lett., 183, 149-152 (1991).
18. J. M. Wood, B. Kahr, S. H. Hoke, L. Dejarme, R. G. Cooks and D. Ben-Amotz, "Oxygen and Methylene
Adducts of C60 and C70," J. Am. Chem. Soc.,113, 5907-5908 (1991).
19. L. S. Sunderlin, J. A. Paulino, J. Chow, B. Kahr, D. Ben-Amotz and R. R. Squires, "Gas-Phase Reactivity
of Fullerene Anions," J. Am. Chem. Soc., 133, 5489-5490 (1991).
20. L. M. Roth, Y. Huang, J. Schwedler, C. J. Cassady, D. Ben-Amotz, B. Kahr and B. S. Freiser, "Evidence
for an Externally Bound Fe+-Buckminsterfullerene, FeC60+, Complex in the Gas Phase," J. Am. Chem. Soc., 113,
6298-6300 (1991).
21. S. H. Hoke II, J. Molstad, G. L. Payne, J. C. Gunderson, B. Kahr, D. Ben-Amotz and R. G. Cooks, "Aromatic
Hydrocarbon Derivatives of Fullerenes," Rapid Commun. Mass Spectrom., 5, 472-474 (1991).
22. D. Ben-Amotz and M. Ritter, "Simple Models for Complex Supercritical Fluid Mixtures," 18th Proceedings:
NoBCChE '91, p. 38-46.
23. D. Ben-Amotz, F. LaPlant, J. Gardecki, D. Shea, and D. List, "Raman Studies of Molecular Potential
Energy Surface Shape Changes in Supercritical Fluids," in Supercritical Fluid Technology: Theoretical
and Applied Approaches to Analytical Chemistry, ACS symposium 488, ed. F. V. Bright and M. E. P. McNally,
(ACS, Washington, 1992) p. 18-30.
24. A. Williams and D. Ben-Amotz, "A Molecular-Optical Viscometer Based on Fluorescence Depolarization,"
Analytical Chemistry, 64, 700-703 (1992).
25. D. Ben-Amotz, M.-R. Lee, S. Y. Cho and D. J. List, "Solvent and Pressure Induced Perturbations of the
Vibrational Potential Surface of Acetonitrile," J. Chem. Phys., 96, 8781-8792 (1992).
26. L. E. S. de Souza and D. Ben-Amotz, "Optimized Perturbed Hard Sphere Expressions for the Structure and
Thermodynamics of Lennard-Jones Fluids," Mol. Phys., 78, 137-49 (1992).
27. D. Ben-Amotz and D. R. Herschbach, "The Hard Fluid Model for Solvent Induced Shifts in Molecular
Vibrational Frequencies," J. Phys. Chem., 97, 2295-2306 (1993).
28. G. S. Devendorf and D. Ben-Amotz, "Vibrational Frequency Shifts of Fluid Nitrogen up to Ultrahigh
Temperatures and Pressures," J. Phys. Chem., 97, 2307-2313 (1993).
29. D. Ben-Amotz, "Chemical Reaction Volumes in Model Fluid Systems. I. Hard Sphere Solvation and Diatomic
Dissociation Processes," J. Phys. Chem., 97, 2314-2319 (1993).
30. D. Ben-Amotz and K. G. Willis, "Molecular Hard Sphere Volume Increments," J. Phys. Chem., 97,
7736-7742 (1993).
31. L. E. S. de Souza, C. L. Guerin, D. Ben-Amotz and I. Szleifer, "Statistical Mechanics of Solvent
Induced Forces and Vibrational Frequency Shifts. Low Density Expansions and Monte Carlo Simulations,"
J. Chem. Phys., 99, 9954 (1993).
32. R. Ravi, L. E. S. de Souza and D. Ben-Amotz, "Reaction Volumes in Model Fluid Systems II.
Diatomic Dissociation in Lennard-Jones Solvents," J. Phys. Chem., 97, 11835 (1993).
33. M.-R. Lee and D. Ben-Amotz, "Pressure Induced Frequency Shifts of Ethane and Methyliodide. Evidence for
the Formation of CH Hydrogen-Bonds in High Density Fluids," J. Chem. Phys. (communication), 99, 10074
(1993).
34. D. Ben-Amotz and L. E. S. de Souza, "Solvent Mean Force Perturbations of Molecular Vibration,
Isomerization and Dissociation," Proceeding of the 26th Jerusalem Symposium, Reaction Dynamics in Clusters
and Condensed Phases, J. Jortner, R. D. Levine and B. Pullman Eds., (Kluwer Academic Publishers,
Boston, 1994) p. 441-460.
35. A. M. Williams, Y. Jiang and C. Ben-Amotz, "Molecular Reorientation Dynamics and Microscopic Friction
in Liquids," Chem. Phys., 180, 119-130 (1994).
36. L. E. S. de Souza, A. Stamatopoulou, and D. Ben-Amotz, "Chemical Potentials of Hard Sphere Solutes
in Hard Sphere Solvents. Monte Carlo Simulations and Analytical Approximations," J. Chem. Phys., 100,
1456-1459 (1994).
37. R. Ravi and D. Ben-Amotz, "Translational and Rotational Dynamics in Liquids. Comparison of Experiment,
Kinetic Theory and Hydrodynmaics," Chem. Phys., 183, 385 (1994).
38. K. F. Schrum, A. M. Williams, S. A. Haerther, and D. Ben-Amotz, "Molecular Fluorescence Thermometry,"
Analytical Chem., 66, 2788-90 (1994).
39. D. Ben-Amotz, F. LaPlant, Y. Jiang, and T. Biermann, "Application of Raman Scattering to Plastic
Recycling and Process Monitoring," Proc. of the Polyurethanes 1994 Conference (Technomic Pub. Co., Lancaster
PA, 1994), p.375.
40. L. E. S. de Souza and D. Ben-Amotz, "Solvent Mean Force Perturbations of Diatomic Dissociation Reactions.
Comparison of Perturbed Hard Fluid and Computer Simulation Results," J. Chem. Phys., 101, 4117
(1994).
41. L. E. S. de Souza and D. Ben-Amotz, "Hard Fluid Model for Molecular Solvation Free Energies," J. Chem.
Phys., 101, 9858 (1994).
42. A. Stamatopoulou, L. E. S. de Souza, J. Talbot, and D. Ben-Amotz, "Chemical Potentials of Hard Molecular
Solutes in Hard Sphere Fluids. Monte Carlo Simulations and Analytical Approximations," J. Chem. Phys., 102,
5066 (1995).
43. F. LaPlant and D. Ben-Amotz, "Design and Construction of a Microscope Based Raman System," Rev. Sci.
Instrum., 66, 3537 (1995).
44. C. A. Thompson, J. S. Reynolds, F. P. LaPlant, D. Ben-Amotz, K. J. Webb, "Raman Spectroscopic Studies
of Diamond in Intralipid," Optics Lett., 20, 1195 (1995).
45. E. J. Hutchinson, D. Shu, F. LaPlant, and D. Ben-Amotz, "Measurement of Fluid Film Thickness on Curved
Surfaces by Raman Spectroscopy," Appl. Spectrosc., 49, 1275-78 (1995).
46. L. E. S. de Souza and D. Ben-Amotz, "Vibrational frequency shifts of H2 in rare gas clusters and
solutions. Comparison of semi-classical theory and experiment." J. Chem. Phys., 104, 139-47 (1996).
47. F. LaPlant, G. Laurence and D. Ben-Amotz, "Temperature Measurement of Materials by Raman Spectroscopy"
Appl. Spectrosc., 50, 1034-38 (1996).
48. G. S. Devendorf and D. Ben-Amotz, "Raman Spectroscopy and Theoretical Modeling of HCl Vibrational
Frequency Shifts in High Pressure Argon." J. Chem. Phys., 104, 3479-85 (1996).
49. A. Stamatopoulou and D. Ben-Amotz, "Chemical Potentials of Hard Polyatomic Solutes in Hard Sphere
Fluids", J. Chem. Phys., 106, 1181-86 (1996).
50. K. F. Schrum, Seung Hyeon Ko and D. Ben-Amotz "Description and Theory of a Fiber-Optic Confocal an
Superfocal Raman Micro-Spectrometer" Appl. Spectrosc. , 50, 1150-55 (1996).
51. F. LaPlant, E. J. Hutchinson, and D. Ben-Amotz, "Raman Measurements of Localized Pressure Variations
in Lubricants Above the Glass Transition." Journal of Tribology, 119, 119-822 (1997).
52. D. Ben-Amotz, "Excluded Volume Anisotropy and Two-Cavity Distribution Functions in Hard Sphere Fluids,"
J. Chem. Phys., 106, 5631-37 (1997).
53. Y. Melendez, K. F. Schrum and D. Ben-Amotz "Quantitation of Poly(Ethylene Glycol) Concentration Using
Raman Spectroscopy," Appl. Spectrosc., 51, 1176-78 (1997).
54. J. S. Reynolds, C. A. Thompson, K. J. Webb, F. P. LaPlant, and D. Ben-Amotz, "Frequency domain
modeling of reradiation in highly scattering media," Appl. Opt., 36, 2252-59, (1997).
55. J. Ma and D. Ben-Amotz, "Rapid Micro-Raman Imaging Using Fiber Bundle Image Compression," Appl.
Spectrosc., 51, 1845-9 (1997) .
56. D. Ben-Amotz, A. Stamatopoulou, and B. J. Yoon, "Three-Body Distribution Functions in Hard Sphere Fluids.
Comparison of Excluded-Volume-Anisotropy (EVA) Model Predictions and Monte Carlo Simulation," J. Chem. Phys.,
107, 6831 (1997).
57. D. Ben-Amotz, E. Hutchinson and I. Kudish , "New Theoretical and Experimental Probes of Tribochemistry
in Model Bearing Contacts," Tribology Lett., 4, 171-74 (1998).
58. E. J. Hutchinson and D. Ben-Amotz, "Molecular Force Measurement in Liquids and Solids Using Vibrational
Spectroscopy," J. Phys. Chem. B, 102, 3354-62 (1998).
59. A. Stamatopoulou and D. Ben-Amotz, "Cavity Formation Free Energies for Rigid Chains in Hard Sphere
Fluids", J. Chem. Phys., 108, 7294-7300 (1998).
60. M.H. A. Hu, L. E. S. de Souza, M.-R. Lee and D. Ben-Amotz, “Pressure and Temperature Dependent
Gauche-Trans Isomerization of 1-bromopropane. Raman Measurements and Statistical Thermodynamic Analysis,”
J. Chem. Phys.,110, 2498-507 (1999).
61. G. Devendorf, M-H. A. Hu and D. Ben-Amotz, “Pressure Dependent Vibrational Fermi Resonance in Liquid
CH3OH and CH2Cl2”, J. Phys. Chem., 52, 10614-619 (1999).
62. D. Ben-Amotz and I. Kudish, “Modeling Tribochemical Processes using a Combined Molecular and Hydrodynamics
Approach”, Lubrication at the Frontier, Tribology Series, 36, Ed. D., Dowson, (Elsevier, New York,1998),
p. 451-56.
63. Brian McClain, Jiaying Ma, and Dor Ben-Amotz, “Optical Absorption and Fluorescence Spectral Imaging
Using Fiber Bundle Image Compression,” Appl. Spectrosc. ,53, (1999), 1118-22.
64. B. M. McClain, S. Clark, R. Gabriel and D. Ben-Amotz, “Educational Applications of Infrared and Raman
Spectroscopy: A Comparison of Experiment and Theory,” J. Chem. Ed., 77, 654-60 (2000).
65. A. D. Gift, J. Ma, K. S. Haber, B. L. McClain and D. Ben-Amotz, “Near-IR Raman Imaging Microscope Based
on Fiber-Bundle Image Compression”, J. Raman Spectrosc. (special issue on advanced instrumentation), 30
(1999), 757-65.
66. I. I. Kudish and D. Ben-Amotz, "Modeling polymer molecule scission in EHL contacts," in The Advancing
Frontiers of Engineering Tribology, Proceeding s of the 1999 STLE/ASME, H. S. Chen Tribology Surveillance,
Ed. Q. Wang, J. Netzel and F. Sadeghi, (STLE/ASME, Florida, 1999).
67. D. Ben-Amotz and I. Omelyan, "Cavity Formation Energies for Diatomic and Spherical Solutes in a Diatomic
Hard Body Fluid," J. Chem. Phys., 113 (2000) 4349-58.
68. D. Zhang and D. Ben-Amotz, "Enhanced Chemical Classification of Raman Images with of Strong Fluorescence
Interference," Appl. Spectrosc., 54 (2000) 1379-83.
69. Y. Melendez-Pagan and D. Ben-Amotz, "Intermolecular forces and bond length changes inhigh pressure
fluids. Vibrational spectroscopic measurement and generalized perturbed hard fluid analysis," J. Phys.
Chem.,10 (2000) 7858-66.
70. B. L. McClain, H. G. Hedderich, A. D. Gift, D. Zhang, K. N. Jallad, K. S. Haber, J. Ma and D. Ben-Amotz
"Fast Chemical Imaging," Spectroscopy (Feature Article), Sept. 2000, vol. 15 (9) p. 28-34.
71. H. Fenniri, H. G. Hedderich, K. S. Haber, J. Achkar and D. Ben-Amotz, "Towards the dual recursive
deconvolution (DRED) of resin-supported combinatorial libraries: A non-invasive methadology based on bead
self-encoding and multispectral imaging," Angewandte Chemie,39 (2000) 4483-85.
72. D. Zhang, J. D. Hanna, D. Ben-Amotz, "Influence of laser illumination geometry on the power distribution
advantage," Appl. Spectrosc., 55 (2001) 61-65.
73. A. D. Gift and D. Ben-Amotz, “Pressure stabilization and solvation thermodynamics of a hemiketal
reaction intermediate,” J. Phys. Chem.A, 104(2000), 49, 11459-11462.
74. Y. Melendez-Pagan, Brian Taylor and D. Ben-Amotz, "Cavity formation and dipolar contributions to the
guache-trans isomerization of 1-chloropropane and 1,2-dichloroethane," J. Phys. Chem., submitted.
75. I. Omelyan and D. Ben-Amotz , “Chemical potentials of chain solutes in hard body fluids,” J. Mol.
Liq., 92, (2001), 3-14 [No. 1-2, Special Issue "Modern Problems of Soft Matter Theory", edited by D.
Henderson and M. Holovko].
76. I. Omelyan and D. Ben-Amotz , “Self-consistent correction to the equation of state and chemical potentials
of hard chain fluid mixtures ,” J. Chem. Phys., 114, 5735-5744 (2001).
77. K. N. Jallad, M. Santhanam, M. D. Cohen and D. Ben-Amotz, "Chemical mapping of thaumasite formed in
sulfate attacked cememt mortar using near-infrared Raman imaging microscopy," Cement and Concrete Research,
Cement and Concrete Research, 31, 953-958 (2001).
78. T. Cai, D. Zhang and D. Ben-Amotz, "Enhanced Chemical Classification of Raman Images using Wavelet
Transformation," Appl. Spectrosc. (2001), 55(9), 1124-1130.
79. I. I. Kudish, B. E. Taylor ad D. Ben-Amotz, "A theoretical approach to modeling tribo-chemical processes
in lubricated contacts," in press.
80. D. Zhang, K. Jallad, D. Ben-Amotz, "Stripping of cosmic spike spectral artifacts using a new upper-bound
spectrum algorithm," Appl. Spectrosc. (2001), 55(11), 1523-1531.
81. M. M. McGuire, K. N. Jallad, D. Ben-Amotz and R. J. Hammers, “Chemical Mapping of Elemental Sulfur on
Pyrite and Arsenopyrite Surfaces using Near-Infrared Raman Imaging Microscopy,” Appl. Surf. Sci., 178, 105-115
(2001).
82. D. Zhang, K. N. Jallad and D. Ben-Amotz, “Stripping of Cosmic Spike Spectral Artifacts using a New Upper
Bound Spectrum Algorithm,” Appl. Spectrosc.,55, 1523-1531 (2001).
83. K. N. Jallad and D. Ben-Amotz, “ Chemical imaging of iron oxides and oxyhydroxides using near infrared
Raman imaging microscopy,” Mater. Sci. Tech. Ser. 17, 1479-1486 (2001).
84. K. N. Jallad, A. Erdemir and D. Ben-Amotz, “Raman Chemical Imaging of Tribological Surfaces,” STLE
Tribology Trans., 45, 239-245 (2002).
85. K. N. Jallad and D. Ben-Amotz, “Raman Chemical Imaging of Tribological Nitride Coated (TiN, TiAlN)
Surfaces,” Wear, 252, 956-969 (2002).
86. D. Zhang and D. Ben-Amotz, “Removal of Cosmic Spikes from Hyper-Spectral Images using a Hybrid Upper
Bound Spectrum Method”, Appl. Spectrosc., 56, 91-98 (2002).
87. B. L. McClain and D. Ben-Amotz,“Global Quantitation of the Solvent Effects on the Isomerization
Thermodynamics of 1,2-dichloroethane and trans-1,2-dichlorocyclohexane,” J. Phys. Chem. B, 106, 7882-7888
(2002).
88. Dongmao Zhang and Dor Ben-Amotz, “Identification of Engineering Plastics using Raman Spectroscopy.
Critical Comparison of Spectral Classification Methods,” Appl. Spectrosc., submitted.
89. Michael D. Kennedy, Karim N. Jallad ,David H. Thompson ,Dor Ben-Amotz, “Philip S. LowOptical imaging of
metastatic tumors using folate-targeted fluorophores,” Journal of Biomedical Optics, 8, 636 (2003).
90. Michael D. Kennedy, Karim Jallad, June Lu, Philip S. Low, Dor Ben-Amotz, “Evualuation of folate conjugate
uptake and transport by the choroid plexus of mice,” Pharmaceutical Research, 20, 714 (2003).
91. Brian L. McClain and Dor Ben-Amotz, “Perturbed Hard-Body Fluid Theoretical Analysis of Solvent Effects
on the Isomerization of 1,2-Dichloroethane and trans-1,2-Dichlorocyclohexane,” J. Chem. Phys.,117, 6590-98
(2002).
92. Dor Ben-Amotz, Alan Gift, R. D. Levine, “Improved Corresponding States Scaling of the Equations of State
of Simple Fluids,“ 117, 4632-4634 (2002).
93. Dor Ben-Amotz, Alan Gift and R. D.Levine, “Updated Principle of Corresponding States,” J. Chem. Ed.,
81, 142-6 (2004).
94. A. Gift and D. Ben-Amotz, “Perturbed Hard Fluid Theoretical Analysis of the Effects of Solvation on a
Hemiketal Formation Reaction,” J. Chem. Phys, 118, 6427-36 (2003).
95. D. Ben-Amotz and G. Stell, “Analytical Implementation and Critical Tests of Fluid Thermodynamic
Perturbation Theory,” J. Chem. Phys., 119, 10777-88 (2003); see Erratum, J Chem Phys 120, 4994 (2004).
96. Dongmao Zhang, Jeanette D. Hanna and Dor Ben-Amotz, “Application Note: Single Scan Cosmic Spike Removal
using the Upper Bound Spectrum Method,” Appl. Spectrosc., 57, 1303-5 (2003).
97. Dor Ben-Amotz and J. M. Honig, “Rectification of Thermodynamic Inequalities,” J. Chem. Phys., 118, 5932-36
(2003).
98. D. Zhang, Y. Xie, M. F. Mrozek, C. Ortiz, V. J. Davisson and D. Ben-Amotz, “Raman Detection of Proteomic
Analytes”, Anal.Chem., 75, 5703 (2003).
99. J. M. Honig and D. Ben-Amotz, “Analysis of Spontaneous Processes Using Equilibrium Thermodynamics”, J.
Chem. Ed.,83, 132 (2006).
100. Y. L. Loethen, D. Zhang, R. Favors, S. Gaylor and D. Ben-Amotz, “Second Derivative Variance Minimization
Method for Automated Spectral Subtraction,” Applied Spectrosc., 58, 272-78 (2004).
101. D. Ben-Amotz and G. Stell, “Hard Sphere Perturbation Theory of Fluids with Soft-Repulsive Potentials,”
J. Chem. Phys., 120, 4844-50 (2004).
102. D. Ben-Amotz and G. Stell, “Reformulation of Weeks-Chandler-Andersen Perturbation Theory Directly in
Terms of a Hard-Sphere Reference System,” J. Phys. Chem. B, 108, 6877-82 (2004).
103. F. O. Raineri, G. Stell and D. Ben-Amotz, “Progress on TPT and SCOZA Relevant to Structural Arrest
Problems,” J. Phys.: Condens. Matter., 16, S4887–4900 (2004).
104. Dongmao Zhang, Melissa F. Mrozek, Yong Xie and Dor Ben-Amotz, “Chemical Segregation and Reduction of
Raman Background Interference using Drop Coating Deposition”, Appl. Spectrosc., 58, 929 (2004).
105. V. P. Drachev, M. Thoreson, E. Khaliullin, A. K. Sarychev, D. Zhang, D. Ben-Amotz, and V. M. Shalaev,
“Semicontinuous silver films for protein sensing with SERS”, SPIE proceedings, v. 5221, 76-81 (2003).
106. Dongmao Zhang, Corasi Ortiz, Yong Xie, V. Jo Davisson and Dor Ben-Amotz “Detection of the Site of
Phosphorylation in a Peptide using Raman Spectroscopy and Partial Least Squares Discriminant Analysis”,
Spectr. Chim. Acta A, 61, 471-475 (2005).
107. Corasi Ortiz, Dongmao Zhang, Yong Xie, V. Jo Davisson, and Dor Ben-Amotz “Identification of Insulin
Variants using Raman Spectroscopy”, Anal. Biochem., 332, 245–252 (2004).
108. Yong Xie, Dongmao Zhang, Gotam Jarori, V. Jo Davisson and Dor Ben-Amotz “Raman Detection of Peptide
Tyrosine Phosphorylation,” Anal. Biochem., 332, 116–121 (2004).
109. Dongmao Zhang, Yong Xie, Dor Ben-Amotz and Raymond F DeGrella, “New Substrate for Raman, Infrared and
Mass Spectroscopic Chemical Analysis” LabTech 2004, 49-52 (2004).
110. Ryan N. Favors, Yanan Jiang, Yvette L. Loethen, and Dor Ben-Amotz, "External Raman standard for absolute
intensity and concentration measurements." Rev Sci Inst 76, 033108:1-5 (2005).
111. Yong Xie, Yanan Jiang and Dor Ben-Amotz, “Detection of amino acid and peptide phosphate protonation using
Raman Spectroscopy.” Anal. Biochem., 343, 223-230 (2005).
112. Corasi Ortiz, Penelope Cipriani, Yong Xie, Xiuping Liu, Dongmao Zhang, Gotam K. Jarori and Dor
Ben-Amotz, “New Dimensions in Pharmaceutical Diagnostics.” Am. Pharm. Rev., 8, 30-34 (2005).
113. Dor Ben-Amotz, Fernando O. Raineri, and George Stell, “Solvation Thermodynamics. Theory and
Applications.” J. Phys. Chem. B, 109, 6866-6878 (2005).
114. Penelope Cipriani and Dor Ben-Amotz, “Identification and Characterization of select members of the
Taxane family using Raman Spectroscopy.” J. Raman Spectroscopy, 36, 1052-105 (2005).
115. Dongmao Zhang, Yong Xie, Shirshendu K. Deb, V. Jo Davison and Dor Ben-Amotz “Isotope Edited Internal
Standard Method for Quantitative Surface-Enhanced Raman Spectroscopy,” Anal. Chem., 3563-3569, 77
(2005).
116. V.P. Drachev, M.D. Thoreson, V.C. Nashine, E.N. Khaliullin, D. Ben-Amotz, V.J. Davisson, and V.M.
Shalaev, Adaptive silver films for surface-enhanced Raman spectroscopy of biomolecules, J. Raman Spec.,
648-656, 36 (2005).
117. V. P. Drachev, V. Nashine, M. D. Thoreson, D. Ben-Amotz, V. J. Davisson, and V. M. Shalaev, “Adaptive
Silver Films for Detection of Antibody-Antigen Binding.” Langmuir, 21, 8368-8373 (2005).
118. Fernando O. Raineri, George Stell, and Dor Ben-Amotz, “New mean-energy formulas for free energy
differences.” Mol. Phys., 103, 3209–3221, (2005).
119. Newman SP, Clifford SJ, Coveney PV, Gupta V, Blanchard JD, Serafin F, Ben-Amotz D, Diamond S “Anomalous
fluorescence in near-infrared Raman spectroscopy of cementitious materials,” Cement and Concrete Research 35,
1620-1628 (2005).
120. C. Ortiz, D. Zhang, Y. Xie, A. E. Ribbe and Dor Ben-Amotz, "Validation of the Drop Coating Deposition
Raman Method for Protein Analysis." Anal. Biochem., 353, 157-166 (2006).
121. Dor Ben-Amotz, "Global Thermodynamics of Hydrophobic Cavitation, Dewetting and Hydration." J. Chem.
Phys., 123, 184504:1-8 (2005).
122. M. D. Neglia, Y. N. Jiang, Y. Xie, and D. Ben-Amotz, "Confocal micro-Raman spectroscopy and
proteomic applications." Spectroscopy, 25 (2005).
123. Dor Ben-Amotz and J. M. Honig, "Average Entropy Dissipation in Irreversible Mesoscopic Processes." Phys.
Rev. Lett., 96, 020602:1-4 (2006).
124. Dor Ben-Amotz and Ben Widom, "Generalized Solvation Heat Capacities," J. Phys. Chem. B, 110, 19839-49
(2006).
125. Dor Ben-Amotz and J. M. Honig, "The Rectified Second Law of Thermodynamics," J. Phys. Chem. B, 110,
19966-19972 (2006).
126. Dor Ben-Amotz, "Revisiting Bohr's Semi-Classical Quantum Mechanics", J. Phys. Chem. B, 110, 19861-19866
(2006).
127. Corasi Ortiz, Yong Xie, Dongmao Zhang and Dor Ben-Amotz, "Proteomic Applications of Drop Coating
Deposition Raman Spectroscopy," in ACS Symposium Series, /New Approaches in Biomedical Spectroscopy/,
K. Kneipp, R. Aroca, H. Kneipp, E. Wentrup-Byrne (Eds) ACS Publisher 2007, in press.
128. B. Widom and D. Ben-Amotz, "Note on the energy density in the solvent induced by a solute," Proc. Nat.
Acad. Sci., 103, 18887-90 (2006).
129. D. Ben-Amotz and B. Widom, "Non-Ideal Gas Solvation Thermodynamics," J. Chem. Phys., 126, 104502:1-10
(2007).
130. D. Ben-Amotz, M. El-Sayed, B. J. Schwartz, and J. Z. Zhang, "Preface to the Charles B. Harris
Festschrift," J. Phys. Chem. B, 110, 19745-19746 (2006).
131. Corasi Ortiz, Dongmao Zhang, Alexander E. Ribbe, Yong Xie, and Dor Ben-Amotz, "Analysis of Insulin
Amyloid Fibrils By Raman Spectroscopy", Biophys. Chem., 128, 150--155 (2007).
132. D. Ben-Amotz and R. Underwood, "Unraveling Water's Entropic Mysteries: Unified View of Non-
Polar, Polar and Ionic Hydration." Accounts of Chemical Research, 41, 957–967 (2008).
133. Yong Xie, Dongmao Zhang and Dor Ben-Amotz, " Protein-Ligand Binding Detected Using
Ultrafiltration Raman Difference Spectroscopy," Anal. Biochem., 373, 154–160 (2008).
134. Yvette L. Loethen, Giselle M. Knudsen, Brandon Davis, Ravindra Gudihal, V. Jo Davisson, Dor Ben-
Amotz, "Protein Quantitation in 2-D Gels using Fluorescence with Water Raman as an Internal Standard,"
J. Proteome Res. (Technical Note), 7,1341-1345 (2008).
135. Pradeep Perera, Melanie Wyche, Yvette Loethen and Dor Ben-Amotz, "Solute-Induced
Perturbations of Solvent-Shell Molecules Observed Using Multivariate Raman Curve Resolution," J. Am.
Chem. Soc. (communication), 130, 4576-4579 (2008).
136. Dor Ben-Amotz, “Virial Theorem and Energy Partitioning in Systems with Mixed Power-Law
Potentials,” Mol. Phys. 106, 547–555 (2008).
137. J. M. Honig and Dor Ben Amotz, “Rectification of Thermodynamic Inequalities as a Means of
Characterizing Irreversible Phenomena,” Chem. Educator 13, 220-226 (2008).
138. Shirshendu K. Deb, Brandon Davis, Giselle M. Knudsen, Ravindra Gudihal, Dor Ben-Amotz, and V.
Jo Davisson “Detection and Relative Quantification of Proteins by Surface Enhanced Raman Using
Isotopic Labels,” J. Am. Chem. Soc., 130 (30), 9624–9625 (2008).
139. Giselle M. Knudsen, Brandon M. Davis, Shirshendu K. Deb, Yvette Loethen, Ravindra Gudihal,
Pradeep Perera, Dor Ben-Amotz and V. Jo Davisson, "Quantification of Isotope Encoded Proteins in 2-D
Gels Using Surface Enhanced Resonance Raman " Bioconjugate Chemistry, 19, 2212–2220 (2008).
140. Pradeep Perera, Shirshendu K. Deb, V. Jo Davisson, and Dor Ben Amotz “Multiplexed
Concentration Quantification Using Isotopic Surface Enhanced Resonance Raman Scattering,” J. Raman
Spectroscopy, in press, published on-line.
141. Shirshendu K. Deb, Brandon Davis, Dor Ben-Amotz, and V. Jo Davisson, “Accurate Concentration
Measurements Using Surface-Enhanced Raman and Deuterium Exchanged Dye Pairs,” Appl. Spectosc.,
62, 1001-1007 (September 2008).
143. Pradeep N. Perera, Breanna Browder and Dor Ben-Amotz , “Perturbations of Water by Alkali Halide
Ions Measured using Multivariate Raman Curve Resolution”, J. Phys. Chem. B, 113, 1805–1809 (2009)
(Letter).
144. P. N. Perera, K. R. Fega, C. Lawrence, E. J. Sundstrom, J. Tomlinson-Phillips, and Dor Ben-Amotz,
“Observation of Water Dangling OH Bonds Around Dissolved Non-Polar Groups”, Proceedings of the
National Academy of Science USA, 106, 12230-12234 (2009).
145. Robin Underwood, Jill Tomlinson-Phillips, and Dor Ben-Amotz, "Are Long-Chain Alkanes Hydrophilic?" J.
Phys. Chem. B, 114(26), 8646-8651 (2010).
146. Dor Ben-Amotz, "Unveiling Electron Promiscuity" J. Phys. Chem. Lett. 2(10), 1216-1222 (2011).
147. Jill Tomlinson-Phillips, Joel Davis, Dor Ben-Amotz, Daniel Spangberg, Ljupco Pejov, and Kersti Hermansson,
"Structure and Dynamics of Water Dangling OH Bonds in Hydrophobic Hydration Shells. Comparison of Simulation
and Experiment" J. Phys. Chem. B, 115(23), 6177-6183 (2011).
148. Brandon M. Davis, Amanda J. Hemphill, Derya Cebeci Maltas, Michael A. Zipper, Ping Wang, and Dor Ben-Amotz,
"Multivariate Hyperspectral Raman Imaging Using Compressive Detection" Anal. Chem., 83(13), 5086-5092 (2011).
149. Kamil P. Geirszal, Joel G. Davis, Michael D. Hands, David S. Wilcox, Lyudmila V. Slipchenko, and Dor Ben-Amotz,
"Pi-Hydrogen Bonding in Liquid Water" J. Phys. Chem. Lett., 2, 2930-2933 (2011).
150. Kathryn Rebecca Fega, David Scott Wilcox, and Dor Ben-Amotz, "Application of Raman Multivariate Curve Resolution
to Solvation-Shell Spectroscopy," Appl. Spectrosc., 66(3), 282-288 (2012).
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