 Jmol._Canvas2D (Jmol) "jmolApplettet"[x] script 1 started FileManager.getAtomSetCollectionFromFile(tethol.pdb) FileManager opening url https://www.chem.purdue.edu/Courses/StructureLabs/Crystal%20Explorer%202/structurefiles/cp_structures/tethol.pdb The Resolver thinks Pdb loadScript ../..//j2s/core/corebio.z.js JSmol exec jmolAppletoct start applet null Jmol JavaScript applet jmolAppletoct__035825386706988__ initializing Jmol getValue debug null Jmol getValue logLevel null Jmol getValue allowjavascript null AppletRegistry.checkIn(jmolAppletoct__035825386706988__) vwrOptions: { "name":"jmolAppletoct","applet":true,"documentBase":"https://www.chem.purdue.edu/Courses/StructureLabs/Crystal%20Explorer%202/structurefiles/cp_structures/holesizes.html","platform":"J.awtjs2d.Platform","fullName":"jmolAppletoct__035825386706988__","codePath":"https://www.chem.purdue.edu/Courses/StructureLabs/Crystal%20Explorer%202/structurefiles/cp_structures/../..//j2s/","display":"jmolAppletoct_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"035825386706988","bgcolor":"#FFFFCC" } setting document base to "https://www.chem.purdue.edu/Courses/StructureLabs/Crystal%20Explorer%202/structurefiles/cp_structures/holesizes.html" (C) 2015 Jmol Development Jmol Version: 14.29.14 2018-05-14 07:48 java.vendor: Java2Script (HTML5) java.version: 2018-01-28 23:38:52 (JSmol/j2s) os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com) Access: ALL memory: 0.0/0.0 processors available: 1 useCommandThread: false appletId:jmolAppletoct (signed) Jmol getValue emulate null defaults = "Jmol" Jmol getValue boxbgcolor null Jmol getValue bgcolor #FFFFCC backgroundColor = "#FFFFCC" Jmol getValue ANIMFRAMECallback null Jmol getValue APPLETREADYCallback Jmol._readyCallback APPLETREADYCallback = "Jmol._readyCallback" callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY Jmol getValue ATOMMOVEDCallback null Jmol getValue AUDIOCallback null Jmol getValue CLICKCallback null Jmol getValue DRAGDROPCallback null Jmol getValue ECHOCallback null Jmol getValue ERRORCallback null Jmol getValue EVALCallback null Jmol getValue HOVERCallback null Jmol getValue IMAGECallback null Jmol getValue LOADSTRUCTCallback null Jmol getValue MEASURECallback null Jmol getValue MESSAGECallback null Jmol getValue MINIMIZATIONCallback null Jmol getValue SERVICECallback null Jmol getValue PICKCallback null Jmol getValue RESIZECallback null Jmol getValue SCRIPTCallback null Jmol getValue SYNCCallback null Jmol getValue STRUCTUREMODIFIEDCallback null Jmol getValue doTranslate null language=en_US Jmol getValue popupMenu null Jmol getValue script null Jmol getValue loadInline null Jmol getValue load null Jmol applet jmolAppletoct__035825386706988__ ready |
Jmol._Canvas2D (Jmol) "jmolAppletoct"[x] script 1 started FileManager.getAtomSetCollectionFromFile(octhol.pdb) FileManager opening url https://www.chem.purdue.edu/Courses/StructureLabs/Crystal%20Explorer%202/structurefiles/cp_structures/octhol.pdb The Resolver thinks Pdb Time for openFile(octhol.pdb): 1037 ms reading 7 atoms ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false 1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them. Default Van der Waals type for model set to Jmol 7 atoms created ModelSet: autobonding; use autobond=false to not generate bonds automatically Time for creating model: 15 ms JSmol exec jmolAppletcub start applet null Jmol JavaScript applet jmolAppletcub__035825386706988__ initializing Jmol getValue debug null Jmol getValue logLevel null Jmol getValue allowjavascript null AppletRegistry.checkIn(jmolAppletcub__035825386706988__) vwrOptions: { "name":"jmolAppletcub","applet":true,"documentBase":"https://www.chem.purdue.edu/Courses/StructureLabs/Crystal%20Explorer%202/structurefiles/cp_structures/holesizes.html","platform":"J.awtjs2d.Platform","fullName":"jmolAppletcub__035825386706988__","codePath":"https://www.chem.purdue.edu/Courses/StructureLabs/Crystal%20Explorer%202/structurefiles/cp_structures/../..//j2s/","display":"jmolAppletcub_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"035825386706988","bgcolor":"#FFFFCC" } setting document base to "https://www.chem.purdue.edu/Courses/StructureLabs/Crystal%20Explorer%202/structurefiles/cp_structures/holesizes.html" (C) 2015 Jmol Development Jmol Version: 14.29.14 2018-05-14 07:48 java.vendor: Java2Script (HTML5) java.version: 2018-01-28 23:38:52 (JSmol/j2s) os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com) Access: ALL memory: 0.0/0.0 processors available: 1 useCommandThread: false appletId:jmolAppletcub (signed) Jmol getValue emulate null defaults = "Jmol" Jmol getValue boxbgcolor null Jmol getValue bgcolor #FFFFCC backgroundColor = "#FFFFCC" Jmol getValue ANIMFRAMECallback null Jmol getValue APPLETREADYCallback Jmol._readyCallback APPLETREADYCallback = "Jmol._readyCallback" callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY Jmol getValue ATOMMOVEDCallback null Jmol getValue AUDIOCallback null Jmol getValue CLICKCallback null Jmol getValue DRAGDROPCallback null Jmol getValue ECHOCallback null Jmol getValue ERRORCallback null Jmol getValue EVALCallback null Jmol getValue HOVERCallback null Jmol getValue IMAGECallback null Jmol getValue LOADSTRUCTCallback null Jmol getValue MEASURECallback null Jmol getValue MESSAGECallback null Jmol getValue MINIMIZATIONCallback null Jmol getValue SERVICECallback null Jmol getValue PICKCallback null Jmol getValue RESIZECallback null Jmol getValue SCRIPTCallback null Jmol getValue SYNCCallback null Jmol getValue STRUCTUREMODIFIEDCallback null Jmol getValue doTranslate null language=en_US Jmol getValue popupMenu null Jmol getValue script null Jmol getValue loadInline null Jmol getValue load null Jmol applet jmolAppletcub__035825386706988__ ready |
Jmol._Canvas2D (Jmol) "jmolAppletcub"[x] loadScript ../..//j2s/core/package.js loadScript ../..//j2s/core/corejmol.z.js loadScript ../..//j2s/core/corescript.z.js JSmol exec jmolApplettet start applet null Jmol JavaScript applet jmolApplettet__035825386706988__ initializing Jmol getValue debug null Jmol getValue logLevel null Jmol getValue allowjavascript null AppletRegistry.checkIn(jmolApplettet__035825386706988__) vwrOptions: { "name":"jmolApplettet","applet":true,"documentBase":"https://www.chem.purdue.edu/Courses/StructureLabs/Crystal%20Explorer%202/structurefiles/cp_structures/holesizes.html","platform":"J.awtjs2d.Platform","fullName":"jmolApplettet__035825386706988__","codePath":"https://www.chem.purdue.edu/Courses/StructureLabs/Crystal%20Explorer%202/structurefiles/cp_structures/../..//j2s/","display":"jmolApplettet_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"035825386706988","bgcolor":"#FFFFCC" } setting document base to "https://www.chem.purdue.edu/Courses/StructureLabs/Crystal%20Explorer%202/structurefiles/cp_structures/holesizes.html" (C) 2015 Jmol Development Jmol Version: 14.29.14 2018-05-14 07:48 java.vendor: Java2Script (HTML5) java.version: 2018-01-28 23:38:52 (JSmol/j2s) os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com) Access: ALL memory: 0.0/0.0 processors available: 1 useCommandThread: false appletId:jmolApplettet (signed) Jmol getValue emulate null defaults = "Jmol" Jmol getValue boxbgcolor null Jmol getValue bgcolor #FFFFCC backgroundColor = "#FFFFCC" Jmol getValue ANIMFRAMECallback null Jmol getValue APPLETREADYCallback Jmol._readyCallback APPLETREADYCallback = "Jmol._readyCallback" callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY Jmol getValue ATOMMOVEDCallback null Jmol getValue AUDIOCallback null Jmol getValue CLICKCallback null Jmol getValue DRAGDROPCallback null Jmol getValue ECHOCallback null Jmol getValue ERRORCallback null Jmol getValue EVALCallback null Jmol getValue HOVERCallback null Jmol getValue IMAGECallback null Jmol getValue LOADSTRUCTCallback null Jmol getValue MEASURECallback null Jmol getValue MESSAGECallback null Jmol getValue MINIMIZATIONCallback null Jmol getValue SERVICECallback null Jmol getValue PICKCallback null Jmol getValue RESIZECallback null Jmol getValue SCRIPTCallback null Jmol getValue SYNCCallback null Jmol getValue STRUCTUREMODIFIEDCallback null Jmol getValue doTranslate null language=en_US Jmol getValue popupMenu null Jmol getValue script null Jmol getValue loadInline null Jmol getValue load null Jmol applet jmolApplettet__035825386706988__ ready script 1 started FileManager.getAtomSetCollectionFromFile(cubhol.pdb) FileManager opening url https://www.chem.purdue.edu/Courses/StructureLabs/Crystal%20Explorer%202/structurefiles/cp_structures/cubhol.pdb The Resolver thinks Pdb Time for openFile(cubhol.pdb): 45 ms reading 9 atoms ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false 1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them. Default Van der Waals type for model set to Jmol 9 atoms created ModelSet: autobonding; use autobond=false to not generate bonds automatically Time for creating model: 4 ms 9 atoms selected specular = false windowCentered = true 1 atoms selected Script completed Jmol script terminated Time for openFile(tethol.pdb): 2009 ms reading 5 atoms ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false 1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them. Default Van der Waals type for model set to Jmol 5 atoms created ModelSet: autobonding; use autobond=false to not generate bonds automatically Time for creating model: 4 ms |