Minou Bina                         email  

Research    Education & Prof.Background   Publications    Data   Home



Bina, M. ed."Gene Regulation: Methods and Protocols" Springer, Humana Press, 2013

Bina M. Gene Regulation. Methods Mol Biol. 977, 1-11 (2013).

Bina M., Novorolsky E. Smith–Magenis syndrome: a mechanistic perspective.  January 12, 2010 http://www.chem.purdue.edu/bina/Publications.htm PDF

Bina M, Wyss P, Lazarus SA, Shah SR, Ren W, Szpankowski W, Crawford GE, Park SP, Song XC. Discovering sequences with potential regulatory characteristics.  Genomics 93, 314-22 (2009).

Bina M.  The genome browser at UCSC for locating genes, and much more!  Mol Biotechnol.  38, 269-75 (2008).

Bina. M. ed. "Gene Mappping, Discovery, and Expression: Methods and Protocols" Springer, Humana Press, 2006

Wyss P, Lazarus SA, Bina M.  A program toolkit for the analysis of regulatory regions of genes.  Methods Mol Biol. 338, 135-52 (2006).

Bina M, Wyss P, Shah SR. A database of 9-mers from promoter regions of human protein-coding genes. Methods Mol Biol. 338, 129-34 (2006).

Bina M. Identification and mapping of paralogous genes on a known genomic DNA sequence. Methods Mol Biol 338, 21-9 (2006). Abstract

Bina M. Use of genome browsers to locate your favorite genes Methods Mol Biol. 338, 1-7 (2006).  Abstract

Pares-Matos EI, Milligan JS, Bina M.  Exploring transcription factor binding properties of several non-coding DNA sequence elements in the human NF-IL6 gene.  J Mol Biol. 357,732-47 (2006).

Bina M., Wyss P., Wenhui R., Szpankowski A., Thomas E., Randhawa R., Reddy S., John PM., Pares-Matos EI., Stein A., Xu H., and Lazarus SA.  Exploring the characteristics of sequence elements in Proximal Promoters of Human Genes.  Genomics. 84, 929-940  (2004).  Abstract

Xie, J., Li, K-C., and Bina, M.:  A Bayesian insertion/deletion algorithm for distant protein motif searching via entropy filtering.   Journal of The American Statistical Association.  99 409-420 (2004).

Gan, T-I., Rowen, L., Nesbitt, R., Roe, B.A., Wu, H., Hu, P., Yao, Z., Kim, U-J., O'Sickey, T. and Bina M.: Genomic organization of human TCF12 gene and spliced mRNA variants producing isoforms of transcription factor HTF4.  Cytogenetic and Genome Research 98, 245-8 (2002).  Abstract

Yang, Y., Pares-Matos, E.I., Tesmer, V.M., Dai, C., Ashworth, S., Huai, J., and Bina, M: Organization of the promoter region of the human NF-IL6 gene.  Biochim Biophys Acta 1577:102-8 (2002).  Abstract

Yang, Y., Tesmer, V.M., and Bina, M.:  Regulation of HIV-1 Transcription in Activated Monocyte Macrophages.  Virology.  299:256-265 (2002). Abstract

Buckner, A.E., Tesmer, V.M., and Bina, M:  Regulation of HIV-1 Transcription By NF-IL6 In Activated Jurkat T Cells.  Virus Research. 89:53-63 (2002)Abstract

Bina, M., Young, J., and Pares-Matos, E.I.:   A Conceptual Scale for Correlating Cytogenetic and Physical Maps.  Cytogenetic and Genome Research.  97:133-135 (2002).  Pubmed

Geng M, Zhang X, Bina M, Regnier F. Proteomics of glycoproteins based on affinity selection of glycopeptides from tryptic digests.
J Chromatogr B Biomed Sci Appl. 752, 293-306 (2001).  Abstract

Bina, M., and Crowley, E.: Sequence Patterns Defining the 5˘ Boundary of Human Genes.  Biopolymers.  59, 347-55 (2001).  Abstract

Bina M., Demmon, S., and Pares-Matos, E.I.:  Syndromes associated with Homo Sapiens Pol II Regulatory Genes.  Prog. Nucleic Acids Res. & Mol. Biol. 64, 171-219 (2000). Abstract

Ji, J., Chakraborty, A., Geng, M. Zhang, X., Amini, A. Bina, M. and Regnier, F.: Strategy for quantitative and qualitative analysis in proteomics based on signature peptides.  J. Chromatography B. 745: 197-210 (2000).  Abstract

Bina M., Demmon, S., and Pares-Matos, E.I.:  Syndromes associated with Homo Sapiens Pol II Regulatory Genes.  Prog. Nucleic Acids Res. & Mol. Biol. 64, 171-219 (2000). Abstract

Choe, W., Ersoy O.K. and Bina M.: Neural Network Schemes for Detecting Rare Events in Human Genomic DNA.  Bioinformatics. 16, 1062-1072 (2000).  Abstract

Choe, W., Ersoy O.K. & Bina M.: Rare Event Detection in Genomic Sequences by Neural Networks and Sample Stratification.  Nonlinear Biomedical Signal Processing, ed. by M. Akay, IEEE Press (2000).  

Stein, A. and Bina, M. :A signal encoded in vertebrate DNA that influences nucleosome positioning and alignment. Nucleic Acids Res. 27:848-53 (1999). Abstract

Rajadhyaksha, A., Riviere, P. Vanvooren, M., Szpirer, J., Szpirer, C., Babin, J., and Bina, M.: Assignment of AR1, Transcription Factor 20 (TCF20), to Human Chromosome 22q13.2 with Somatic Cell Hybrids and in Situ Hybridization. Cytogenet Cell Genet. 8, 176-177 (1998). MedlineLink

Stein, A. Hill, S. A., Cheng, Z., and Bina, M.: Simple Miniaturized Gel System for DNA Sequence Analysis. Nucleic Acids Res. 26, 452-455 (1998). Abstract

Crowley, E. M., Roeder, K., and Bina, M.: A Statistical Model for Locating Regulatory Regions in Genomic DNA. J. Mol. Biol. 268, 8-14 (1997). Abstract

Tesmer, V. M. and Bina, M.: Regulation of HIV-1 Gene Expression by NF-IL6. J. Mol. Biol. 262, 327-335 (1996). Abstract

Zhang, Y., Flejer, W. L., Riviere, M., Szpirer, J., Szpirer, C., and Bina, M.: Identification and assignment of a new gene (D20S756) to chromosome 20p13. Cytogenet Cell Genet 73, 315-316 (1996). MedlineLink

Zhang, Y., Flejer, W. L., Riviere, M., Szpirer, J., Szpirer, C., and Bina, M.: Localization of the Human HTF4 Transcription Factors 4 Gene (TCF12) to Chromosome 15q21. Cytogenet Cell Genet 68, 235-338 (1995).  MedlineLink

Bina, M.: Periodicity of Dinucleotides in Nucleosomes Derived from Simian Virus 40 Chromatin. J. Mol. Biol. 235, 198-208 (1994). Abstract

Tesmer, V., Rajadhyaksha, A., Babin, J. and Bina, M.: NF-IL6 Mediated Transcriptional Activation of the Long Terminal Repeat of the Human Immunodeficiency Virus Type 1. Proc. Natl. Acad. Sci. USA. 90, 7298-7302 (1993). Abstract

Doyle, K., Zhang, Y., and Bina, M.: Distinguishable Patterns of Protein-DNA Interactions Involving Complexes of Basic Helix-Loop-Helix proteins. J. Biol. Chem. 269, 12099-12105 (1994). Abstract

Zhang, Y. and Bina, M.: The Nucleotide Sequence of the Human Transcription Factor HTF4a cDNA. DNA Sequence 2, 397-403 (1992). Abstract

Zhang, Y., Doyle, K. and Bina, M.: Interactions of HTF4 with E Box Motifs in the Long Terminal Repeat of the Human Immunodeficiency Virus Type I. J. Virology 66, 5631-5636 (1992). Abstract

Boger, D. L., Munk, S. A., Zarrinmayeh, H., Takayoshi, I., Haught, J. and Bina, M.: An Alternative and Convenient Strategy for Generation of Substantial Quantities of Singly 5'-32P-End-Labeled Double-Stranded DNA for Binding Studies: Development of a Protocol for Examination of Functional Features of (+)-CC-1065 and the Duocarmycins that Contribute to Their Sequence-Selective DNA Alkylation Properties. Tetrahedron: Recent Advances in Bioorganic Chemistry 47, 2661-2682 (1991).

Powers, H. J. and Bina, M.: In Vitro Assembly of a Positioned Nucleosome near the Hypersensitive Region in Simian Virus 40 Chromatin. J. Mol. Biol. 221, 795-803 (1991). Abstract

Zhang, Y., Babin, J., Feldhaus, A.L., Singh, H., Sharp, P.A., and Bina, M.: HTF4: A New Human Helix-Loop-Helix Protein. Nucleic Acids Res. 19, 4555 (1991). MedlineLink

Zhang, Y. and Bina, M.: Sequence of a HeLa cDNA Provides the DNA Binding Domain and Carboxy Terminus of HE47: a Human Helix-Loop-Helix Protein Related to the Enhancer Binding Factor E47. DNA Sequence 2, 197-202 (1991). Abstract

Ambrose, C. and Bina, M.: A Strategy for Statistical Mapping of Potential Regulatory Regions in the Human Genome. J. Mol. Biol. 216, 485-490 (1990). Abstract

Ambrose, C., Rajadhyaksha, A., Lowman, H., Blasquez, V. and Bina, M.: Locations of Nucleosomes in Simian Virus 40 Chromatin. J. Mol. Biol. 214, 875-884 (1990). Abstract

Lowman, H., and Bina, M.: Correlation Between Dinucleotide Periodicities and Nucleosome Positioning on Mouse Satellite DNA. Biopolymers 30, 861-876 (1990). Abstract

Lowman, H. and Bina, M.: Temperature Mediated Regulation and Downstream Inducible Selection for Controlling Expression from the Bacteriophage Lambda pL Promoter. GENE 96, 133-136 (1990). Abstract

Ambrose, C., Rajadhyaksha, A., Lowman, H., and Bina, M.: Locations of Nucleosomes on the Regulatory Sequences of SV40 DNA. J. Mol. Biol. 210, 255-263 (1989). Abstract

Baker, T.S., Drak, J., and Bina, M.: The Capsid of Small Papova Viruses Contains 72 Pentameric Capsomeres: Direct Evidence from Cryo-Electron-Microscopy of SV40. Biophys. J. 55, 243-253 (1989).  Abstract

Mahnken, R. E., Bina, M., Deibel, R. M., Luebke, K., and Morrison, H.: Photochemically Induced Binding of Rh (phen)2 Cl+/to DNA. Photchem. and Photobiol. 49, 519-522 (1989). Abstract

Baker, T.S., Drak, J., and Bina, M.: The Three-Dimensional Structure of Simian Virus 40 Revealed by Cryo-Electron Microscopy. Proc. Natl. Acad. Sci. USA 85, 422-426 (1988). Abstract

Behm, M., Lowman, H., Ng, S-C., and Bina, M.: Analysis of Temperature-sensitive Mutations in the SV40 VP1 Gene. Proc. Natl. Acad. Sci. USA 85, 9421-9425 (1988). Abstract

Lowman, H., Behm, M., Brown, S., and Bina, M.: High-level Expression of the SV40 LP1, VP1, and VP2 Genes as Fusion Proteins in Escherichia coli. GENE 68, 23-33 (1988). Abstract

Ambrose, C., McLaughlin, R., and Bina, M.: The Flexibility and Topology of Simian Virus 40 DNA in Minichromosomes. Nucl. Acids Res. 15, 3703-3721 (1987). Abstract

Blasquez, V., Ambrose, C., Lowman, H., and Bina, M.: SV40 Chromatin Structure and Virus Assembly. in Molecular Aspects of Papova Viruses, ed. by Y. Aloni, Martinus Nijhoff Publishing, Boston (1987).

Ambrose, C., Blasquez, V., and Bina, M.: A Block in Initiation of Simian Virus 40 Assembly Initiation Results in the Accumulation of Minichromosomes Containing an Exposed Regulatory Region. Proc. Natl. Acad. Sci. USA 83, 3287-3291 (1986). Abstract

Bina, M.: Simian Virus 40 Assembly: Comments Mol. Cell. Biophys. 4, 55-62 (1986).

Blasquez, V., Stein, A., Ambrose, C., and Bina, M.: Simian Virus 40 Protein VP1 is Involved in Spacing Nucleosomes in Minichromosomes. J. Mol. Biol. 191, 97-106(1986). Abstract

Bina, M., Blasquez, V., and Ambrose, C.: Simian Virus 40 Assembly, Studied by Temperature-Induced Conformational Changes in Capsid Protein VP-1. Biophys. J. 49, 138-140 (1985).

Blasquez, V., and Bina, M.: Salt-Stable Association of Simian Virus 40 Capsid With Simian Virus 40 DNA. FEBS Lett. 181, 64-68 (1985). Abstract

Ng, S-C, Behm, M., and Bina, M.: Temperature-Sensitive BC Mutants of Simian Virus 40; DNA Sequence Alterations Responsible for the Synthesis of Thermosensitive VP1. J. Virol. 54, 646-649 (1985). Abstract

Ng, S-C, Mertz, J., Sanden-Will, S., and Bina, M.: Simian Virus 40 Maturation in Cells Harboring Mutants Deleted in the Agnogene. J. Biol. Chem. 260, 1127-1132 (1985). Abstract

Ng, S-C and Bina, M.: Temperature-Sensitive BC Mutants of Simian Virus 40: Block in Virion Assembly and Formation of Capsid-Chromatin Complexes. J. Virol. 50, 471-477 (1984). Abstract

O'Connor, T. and Bina, M.: The Structure of Triple Helical Poly(U).Poly(A).Poly(U) Studied by Raman Spectroscopy. J. Biomol. Struct. Dyn. 2, 72-76 (1984).

Stein, A. and Bina, M.: A Model Chromatin Assembly System; Factors Affecting Nucleosome Spacing. J. Mol. Biol. 178, 341-363 (1984). Abstract

Blasquez, V., Beecher, S., and Bina, M.: SV40 Morphogenetic Pathway, an Analysis of Assembly-Defective tsB201 DNA-Protein Complexes. J. Biol. Chem. 258, 8477-8484 (1983). Abstract

Bina, M., Blasquez, V., and Ng, S-C: Simian Virus 40 Chromatin Interaction with Capsid Proteins. J. Biomol. Struct. Dyn. 1, 689-704 (1983). Abstract

Bina, M., Beecher, S., and Blasquez, V.: The Stability and Components of Mature Simian Virus 40. Biochemistry 21, 3057-3063 (1982). MedlineLink

Bina, M., Blasquez, V., and Ng, S-C: SV40 Morphogenesis. Cold Spring Harbor Symp. Quant. Biol. XLVII, 565-569 (1982). MedlineLink

O'Connor, T., Bina, M., McMillin, D.R., Moller Haley, M., and Tobias, R.S.: Heavy Metal-Nucleotide Interactions. The Reaction of Methylmercury (II) Nitrate, cis -Dichlorodiammineplatinum (II), and trans -Dichlorodiammineplatinum (II) with Calf Thymus DNA. Biophys. Chem. 15, 223-234 (1982). Abstract

Bina, M., Radonovich, and Roe, B.: Fractionation of Simian Virus 40 DNA Fragments by RPC-5 Column Chromatography. Analytical Biochemistry 114, 105-111 (1981). MedlineLink

Ng, S-C and Bina, M.: Disulfide Bonds Protect the Encapsidated Chromosomes of Simian Virus 40. FEBS Lett. 130, 47-49 (1981). MedlineLink

O'Connor, T., Mansy, S., Bina, M., McMillin, D.R., Bruck, M.A., and Tobias, R.S.: The pH Dependent Structure of Calf Thymus DNA Studied by Raman Spectroscopy. Biophys. Chem. 15, 53-64 (1981). Abstract

Bina, M., Feldmann, R., and Deely, R.: Could Poly(A) Align the Splicing Sites of Messenger RNA Precursors? Proc. Natl. Acad. Sci. USA 77, 1278-1282 (1980). Abstract

Bina, M., Sturtevant, J.M., and Stein, A.: Stability of DNA in Nucleosomes. Proc. Natl. Acad. Sci. USA 77, 4044-4047 (1980). Abstract

Bina, M., Thoren, M., Salzman, N., and Thompson, J.A.: Rapid Sequence Determination of the Late Simian Virus 40 mRNA Leader Using Inhibitors of Reverse Transcriptase. Proc. Natl. Acad. Sci. USA 76, 731-735 (1979).

Stein, A., Whitlock, Jr., J.P., and Bina, M.: Acidic Polypeptides can Assemble Both Histones and Chromatin In Vitro at Physiological Ionic Strength. Proc. Natl. Acad. Sci. USA 76, 5000-5004 (1979).

Bina, M.: Folding of 140 Base Pair Length DNA by a Core of Arginine Rich Histones. J. Biol. Chem. 253, 5213-5219 (1978).

Simpson, R.T., Whitlock, Jr., J.P., Bina, M., and Stein, A.: Histone-DNA Interactions in Chromatin Core Particles. Cold Spring Harbor Symp. in Quant. Biol. XLII, 127-136 (1978).

Bina, M. and Simpson, R.T.: Specific Folding and Contraction of DNA by Histones H3 and H4. Cell 11, 609-618 (1977).

Bina, M. and Singer, M.F.: The Effect of H1 Histone on the Action of DNA Relaxing Enzyme. Nucleic Acids Res. 4, 117-124 (1977).

Breslauer, K.J. and Bina, M.: Relaxation Kinetics of the Helix-Coil Transition of a Self-Complementary Ribo-Oligonucleotide, A7U7. Biophys. Chem. 7, 211-216 (1977).

Deely, R.G., Gordon, J.I., Burns, A.T.H., Mullinex, K.P., Bina, M., and Goldberger, R.F.: Primary Activation of Vittelogenin Gene in Rooster. J. Biol. Chem. 252, 8310-8319 (1977).

Stein, A., Bina, M., and Simpson, R.T.: Crosslinked Histone Octamer as a Model of the Nucleosome Core. Proc. Natl. Acad. Sci. USA 74, 2780-2784 (1977).

Bina, M., Crothers, D.M., Hilbers, C.W., and Shulman, R.G.: Physical Studies on Denatured tRNAGlu E. coli, Proc. Natl. Acad. Sci. USA 73, 2216-2220 (1976).

Bina, M. and Stein, A.: Allosteric Interpretation of Mg2+ Binding to Denaturable E. coli tRNAGlu. Biochemistry 15, 3912-3917 (1976).

Bina, M. and Tritton, T.: Aurintricarboxilic Acid is a Non-Specific Enzyme Inhibitor. J. Mol. Pharm. 12, 191-193 (1976).

Bina, M., Vogel, T., Singer, D., and Singer, M.F.: H5 Histone and DNA Relaxing Enzyme of Chicken Erythrocytes; Interaction with Superhelical DNA. J. Biol. Chem. 251, 7363-7366 (1976).

Bina, M. and Crothers, D.M.: Localization of the Structural Changes Induced in tRNAMet (E. coli) by Acidic pH. Biochemistry 14, 4185-4191 (1975).

Bina, M. and Crothers, D.M.: Conformation Changes of Transfer Ribonucleic Acids. The pH Phase Diagram Under Acidic Conditions. Biochemistry 13, 277l-2775 (1974).

Minou Bina. Ph.D. Thesis, Yale University, 1974, "Conformational Properties of Several Transfer Ribonucleic Acids in Solution."